S Corp Late Filing Penalty: $255 Per Shareholder Per Month
The S corp late filing penalty under IRC 6699 is $255 per shareholder for each month or part of a month that Form 1120-S is late, up to 12 months, for returns due in 2026. For returns due in 2025 it was $245. The penalty applies even when the return shows $0 tax, so a one-owner S corp that files a year late owes $3,060 and a four-owner S corp owes $12,240. A clean three-year filing record can qualify for first-time abatement.
S-Corp late filing penalty details:
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The penalty. $255 per shareholder per month (or fraction of a month) the return is late, up to 12 months, for returns required to be filed in 2026. The amount is adjusted annually for inflation: it was $245 for returns due in 2025 and is $260 for returns due in 2027.
- 1 shareholder, 1 month late: $255
- 1 shareholder, 3 months late: $765
- 2 shareholders, 6 months late: $3,060
- 4 shareholders, 12 months late: $12,240
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Filing deadline. Form 1120-S is due on the 15th day of the 3rd month after the end of the tax year. For calendar-year S-Corps: March 15. An automatic 6-month extension (Form 7004) extends the deadline to September 15.
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What triggers the penalty:
- Filing after March 15 (or September 15 if extended) without an extension
- Filing an extension but then filing after September 15
- Filing a return that’s incomplete (missing K-1s, missing schedules)
- Failing to include all required information (the return is treated as not filed)
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First-time penalty abatement (FTA):
- Available if the taxpayer has filed timely and paid timely for the 3 prior tax years
- No specific reason needed; just a clean compliance history
- Request by phone (calling the IRS) or by letter
- The IRS grants FTA liberally for S-Corp late filing penalties
- Starting summer 2026, FTA is moving to Automatic Exemption from Penalty (AEP) for 2025 tax year returns and later. The IRS lists the S-Corp late filing penalty (IRC 6699(a)(1)) as eligible, and under AEP the penalty isn’t assessed at all if the three prior years are clean
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Reasonable cause abatement:
- If FTA is not available, the taxpayer can argue reasonable cause (IRC 6699(a))
- Reasonable cause examples: death, serious illness or unavoidable absence of the taxpayer or immediate family, fire or natural disaster, inability to obtain necessary records
- NOT reasonable cause: “I didn’t know it was due,” “I thought my accountant filed it,” “I was busy”
- Written explanation attached to Form 1120-S or sent in response to the penalty notice
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Rev. Proc. 2013-30 relief. For S-Corps that made a late S election AND filed the S-Corp return late, Rev. Proc. 2013-30 provides streamlined relief if certain conditions are met (the entity intended to be an S-Corp from the effective date, and shareholders reported income consistently).
How do you request penalty abatement?
Can a low officer salary bring payroll penalties too?
Yes, and they’re separate from the late filing penalty on Form 1120-S. If the IRS decides your officer salary was too low, it can reclassify distributions as wages. That creates employment taxes that were never deposited, and deposit penalties can attach to those unpaid taxes on top of interest.
The failure-to-deposit tiers in IRS Publication 15 (2026) are:
- 2% for deposits 1 to 5 days late
- 5% for 6 to 15 days late
- 10% for 16 or more days late, or paid directly to the IRS
- 15% if still unpaid more than 10 days after the first IRS notice
Which penalties the IRS asserts in a reasonable compensation case isn’t spelled out. In Watson, the judgment covered unpaid employment taxes, penalties and interest of $23,431.23. The trust fund recovery penalty, which makes a person responsible for collecting and paying over the tax personally liable when they willfully fail to, may also apply.
What entity structure works best for a business with multiple owners?
A multi-member LLC taxed as a partnership is the most flexible default. It files Form 1065 and issues K-1s to each member, with the operating agreement controlling profit allocation, voting rights, and buyout terms. An S-Corp works if all owners are US individuals (no entity or foreign owners), the business has no more than 100 shareholders, and everyone agrees on equal-class stock. A C-Corp is necessary if you want venture capital (preferred stock classes), have foreign owners, or plan to retain significant earnings at the 21% corporate rate. LLCs offer the most flexibility for unequal profit splits, special allocations, and varying capital contributions.
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Yarik Yarosh, CPA. "S Corp Late Filing Penalty: $255 Per Shareholder Per Month." Blue Cloud CPA, September 5, 2026, updated October 16, 2026. https://bluecloudcpa.com/guides/small-business-s-corp-late-filing-penalty
This guide is general information, not tax advice for your specific situation. Which points apply, and how, depends on your facts.